PH01002275G0130's details annotation
1.Annotation
ICBR annotation: DCN1, putative, expressed
Blast result AT1G15860 : 1.50E-77
Blast annotation: Domain of unknown function (DUF298)
2.Location
Scaffold: PH01002275
Strand: -
| Region | Start | End |
| gene | 105894 | 110438 |
| mRNA | 105894 | 110438 |
| exon | 105894 | 106261 |
| exon | 106415 | 106480 |
| exon | 106576 | 106682 |
| exon | 106762 | 106822 |
| exon | 107076 | 107159 |
| exon | 107250 | 107286 |
| exon | 107370 | 107444 |
| exon | 107846 | 107930 |
| exon | 109808 | 109876 |
| exon | 110114 | 110438 |
| CDS | 106166 | 106261 |
| CDS | 106415 | 106480 |
| CDS | 106576 | 106682 |
| CDS | 106762 | 106822 |
| CDS | 107076 | 107159 |
| CDS | 107250 | 107286 |
| CDS | 107370 | 107444 |
| CDS | 107846 | 107930 |
| CDS | 109808 | 109876 |
| CDS | 110114 | 110159 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03556.14 | Cullin_binding | 121 | 235 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.