PH01002299G0250's details annotation
1.Annotation
ICBR annotation: coatomer subunit delta, putative, expressed
Blast result AT5G05010 : 6.00E-126
Blast annotation: clathrin adaptor complexes medium subunit family protein
2.Location
Scaffold: PH01002299
Strand: +
| Region | Start | End |
| gene | 167367 | 172111 |
| mRNA | 167367 | 172111 |
| exon | 167367 | 167937 |
| exon | 169116 | 169284 |
| exon | 169536 | 169840 |
| exon | 170170 | 170356 |
| exon | 170430 | 170583 |
| exon | 171010 | 171072 |
| exon | 171157 | 171253 |
| exon | 171354 | 172111 |
| CDS | 167833 | 167937 |
| CDS | 169116 | 169284 |
| CDS | 169536 | 169840 |
| CDS | 170170 | 170356 |
| CDS | 170430 | 170583 |
| CDS | 171010 | 171072 |
| CDS | 171157 | 171253 |
| CDS | 171354 | 171443 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00928.20 | Adap_comp_sub | 147 | 386 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0006886 | intracellular protein transport |
| GO:0006890 | retrograde vesicle-mediated transport, Golgi to ER |
| GO:0016192 | vesicle-mediated transport |
| GO:0030126 | COPI vesicle coat |
| GO:0030131 | clathrin adaptor complex |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.