PH01002333G0030's details annotation
1.Annotation
ICBR annotation: ubiquitin-conjugating enzyme, putative, expressed
Blast result AT5G25760 : 1.60E-41
Blast annotation: peroxin4
2.Location
Scaffold: PH01002333
Strand: +
| Region | Start | End |
| gene | 9954 | 14665 |
| mRNA | 9954 | 14665 |
| exon | 9954 | 11357 |
| exon | 12651 | 12770 |
| exon | 12855 | 12983 |
| exon | 13496 | 13615 |
| exon | 13700 | 13895 |
| exon | 14160 | 14665 |
| CDS | 10947 | 11357 |
| CDS | 12651 | 12770 |
| CDS | 12855 | 12983 |
| CDS | 13496 | 13615 |
| CDS | 13700 | 13895 |
| CDS | 14160 | 14230 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00179.25 | UQ_con | 142 | 218 |
| PF00179.25 | UQ_con | 225 | 302 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016881 | acid-amino acid ligase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.