PH01002369G0280's details annotation
1.Annotation
ICBR annotation: trafficking protein particle complex subunit 1, putative, expressed
Blast result AT1G51160 : 2.40E-70
Blast annotation: SNARE-like superfamily protein
2.Location
Scaffold: PH01002369
Strand: -
| Region | Start | End |
| gene | 208452 | 211195 |
| mRNA | 208452 | 211195 |
| exon | 208452 | 208735 |
| exon | 208931 | 208940 |
| exon | 209341 | 209459 |
| exon | 209772 | 209886 |
| exon | 210821 | 211195 |
| CDS | 208718 | 208735 |
| CDS | 208931 | 208940 |
| CDS | 209341 | 209459 |
| CDS | 209772 | 209886 |
| CDS | 210821 | 211080 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04099.11 | Sybindin | 32 | 175 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005801 | cis-Golgi network |
| GO:0006810 | transport |
| GO:0006888 | ER to Golgi vesicle-mediated transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.