PH01002404G0210's details annotation
1.Annotation
ICBR annotation: zinc finger, C3HC4 type domain containing protein, expressed
Blast result AT4G34040 : 1.80E-35
Blast annotation: RING/U-box superfamily protein
2.Location
Scaffold: PH01002404
Strand: +
| Region | Start | End |
| gene | 138137 | 146607 |
| mRNA | 138137 | 146607 |
| exon | 138137 | 140746 |
| exon | 141827 | 141874 |
| exon | 142812 | 142910 |
| exon | 143517 | 143663 |
| exon | 144830 | 144910 |
| exon | 145982 | 146607 |
| CDS | 139142 | 140746 |
| CDS | 141827 | 141874 |
| CDS | 142812 | 142910 |
| CDS | 143517 | 143663 |
| CDS | 144830 | 144910 |
| CDS | 145982 | 146029 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000341 | exosome_(RNase_complex) COP9_signalosome |
| coexpression network | CFinderM001268 | protein catabolic process, |
| coexpression network | CFinderM001526 | protein catabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.