PH01002412G0260's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT3G52300 : 1.20E-70
Blast annotation: ATP synthase D chain, mitochondrial
2.Location
Scaffold: PH01002412
Strand: +
| Region | Start | End |
| gene | 177010 | 180742 |
| mRNA | 177010 | 180742 |
| exon | 177010 | 177334 |
| exon | 177895 | 177978 |
| exon | 178205 | 178286 |
| exon | 179538 | 179626 |
| exon | 179760 | 179846 |
| exon | 179920 | 180742 |
| CDS | 177158 | 177334 |
| CDS | 177895 | 177978 |
| CDS | 178205 | 178286 |
| CDS | 179538 | 179626 |
| CDS | 179760 | 179846 |
| CDS | 179920 | 180021 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000183 | Oxidative_phosphorylation mitochondrial intermembrane space, protein import into mitochondrial inner membrane, mitochondrial proton-transporting ATP synthase complex, coupling factor F(o), copper chaperone activity, ubiquinol-cytochrome-c reductase activity, mitochondrial electron transport, ubiquinol to cytochrome c, copper ion transport, ATP synthesis coupled proton transport, ribosome biogenesis, hydrogen ion transmembrane transporter activity, |
| coexpression network | CFinderM001332 | protein import into mitochondrial inner membrane, mitochondrial electron transport, ubiquinol to cytochrome c, ubiquinol-cytochrome-c reductase activity, mitochondrial proton-transporting ATP synthase complex, coupling factor F(o), ATP synthesis coupled proton transport, hydrogen ion transmembrane transporter activity, |
| coexpression network | CFinderM001550 | mitochondrial proton-transporting ATP synthase complex, coupling factor F(o), oxidoreductase activity, hydrogen ion transmembrane transporter activity, ATP synthesis coupled proton transport, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05873.11 | Mt_ATP-synt_D | 16 | 168 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Oxidative phosphorylation | F-type H+-transporting ATPase subunit d [EC:3.6.3.14] | ko00190 | K02138 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000276 | mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) |
| GO:0015078 | hydrogen ion transmembrane transporter activity |
| GO:0015986 | ATP synthesis coupled proton transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.