PH01002478G0040's details annotation
1.Annotation
ICBR annotation: ATP-dependent protease, putative, expressed
Blast result AT1G75460 : 7.80E-80
Blast annotation: ATP-dependent protease La (LON) domain protein
2.Location
Scaffold: PH01002478
Strand: +
| Region | Start | End |
| gene | 23565 | 25747 |
| mRNA | 23565 | 25747 |
| exon | 23565 | 24978 |
| exon | 25022 | 25747 |
| CDS | 24835 | 24978 |
| CDS | 25022 | 25687 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000659 | ATP-dependent peptidase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02190.15 | LON_substr_bdg | 55 | 245 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004176 | ATP-dependent peptidase activity |
| GO:0006508 | proteolysis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.