PH01002482G0180's details annotation
1.Annotation
ICBR annotation: ZOS9-03 - C2H2 zinc finger protein, expressed
Blast result AT5G51230 : 7.60E-32
Blast annotation: VEFS-Box of polycomb protein
2.Location
Scaffold: PH01002482
Strand: +
| Region | Start | End |
| gene | 150828 | 158101 |
| mRNA | 150828 | 158101 |
| exon | 150828 | 151160 |
| exon | 151879 | 151931 |
| exon | 152351 | 152410 |
| exon | 153235 | 153276 |
| exon | 153897 | 153945 |
| exon | 154068 | 154120 |
| exon | 155075 | 155308 |
| exon | 155836 | 155919 |
| exon | 156052 | 156131 |
| exon | 156477 | 156566 |
| exon | 157174 | 158101 |
| CDS | 150956 | 151160 |
| CDS | 151879 | 151931 |
| CDS | 152351 | 152410 |
| CDS | 153235 | 153276 |
| CDS | 153897 | 153945 |
| CDS | 154068 | 154120 |
| CDS | 155075 | 155308 |
| CDS | 155836 | 155919 |
| CDS | 156052 | 156131 |
| CDS | 156477 | 156566 |
| CDS | 157174 | 157333 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001275 | HB-other Transcription_Regulator(from PlantTFDB) mRNA_surveillance_pathway |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF09733.8 | VEFS-Box | 232 | 317 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.