Annotation of co-expression genes

PH01002492G0180's details annotation

1.Annotation

ICBR annotation: polyadenylate-binding protein, putative, expressed

Blast result AT4G34110 : 0.00E+00
Blast annotation: poly(A) binding protein 2

2.Location

Scaffold: PH01002492
Strand: -

RegionStartEnd
gene136168142251
mRNA136168142251
exon136168137395
exon137498137704
exon137880138041
exon139359139496
exon139921140010
exon140108140185
exon140267140923
exon141000141118
exon141890142251
CDS137153137395
CDS137498137704
CDS137880138041
CDS139359139496
CDS139921140010
CDS140108140185
CDS140267140923
CDS141000141118
CDS141890142121

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00076.21RRM_12696
PF00076.21RRM_1114182
PF00076.21RRM_1205273
PF00076.21RRM_1308376
PF00658.17PABP549615

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
RNA transportpolyadenylate-binding proteinko03013K13126
mRNA surveillance pathwaypolyadenylate-binding proteinko03015K13126
RNA degradationpolyadenylate-binding proteinko03018K13126

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
GO:0003723RNA binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.