PH01002550G0120's details annotation
1.Annotation
ICBR annotation: PPR repeat domain containing protein, putative, expressed
Blast result AT1G16830 : 8.70E-41
Blast annotation: Pentatricopeptide repeat (PPR) superfamily protein
2.Location
Scaffold: PH01002550
Strand: +
| Region | Start | End |
| gene | 61692 | 73172 |
| mRNA | 61692 | 73172 |
| exon | 61692 | 64728 |
| exon | 65044 | 65124 |
| exon | 65272 | 65382 |
| exon | 66272 | 66336 |
| exon | 66879 | 66938 |
| exon | 67094 | 67216 |
| exon | 68188 | 68254 |
| exon | 68325 | 68401 |
| exon | 72190 | 73172 |
| CDS | 63526 | 64728 |
| CDS | 65044 | 65124 |
| CDS | 65272 | 65382 |
| CDS | 66272 | 66336 |
| CDS | 66879 | 66938 |
| CDS | 67094 | 67216 |
| CDS | 68188 | 68254 |
| CDS | 68325 | 68401 |
| CDS | 72190 | 73045 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13041.5 | PPR_2 | 20 | 66 |
| PF13041.5 | PPR_2 | 88 | 133 |
| PF13041.5 | PPR_2 | 156 | 202 |
| PF12854.6 | PPR_1 | 259 | 289 |
| PF13041.5 | PPR_2 | 296 | 339 |
| PF07767.10 | Nop53 | 404 | 490 |
| PF07767.10 | Nop53 | 499 | 582 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.