PH01002562G0020's details annotation
1.Annotation
ICBR annotation: copper-transporting ATPase, putative, expressed
Blast result AT4G30220 : 1.80E-19
Blast annotation: small nuclear ribonucleoprotein F
2.Location
Scaffold: PH01002562
Strand: +
| Region | Start | End |
| gene | 5570 | 9357 |
| mRNA | 5570 | 9357 |
| exon | 5570 | 5687 |
| exon | 6749 | 7048 |
| exon | 7838 | 7875 |
| exon | 7984 | 8048 |
| exon | 8334 | 9357 |
| CDS | 5663 | 5687 |
| CDS | 6749 | 7048 |
| CDS | 7838 | 7875 |
| CDS | 7984 | 8048 |
| CDS | 8334 | 8397 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00403.25 | HMA | 43 | 101 |
| PF01423.21 | LSM | 111 | 149 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Spliceosome | small nuclear ribonucleoprotein F | ko03041 | K11098 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0030001 | metal ion transport |
| GO:0046872 | metal ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.