PH01002669G0370's details annotation
1.Annotation
ICBR annotation: cleavage and polyadenylation specificity factor, putative, expressed
Blast result AT3G55200 : 0.00E+00
Blast annotation: Cleavage and polyadenylation specificity factor (CPSF) A subunit protein
2.Location
Scaffold: PH01002669
Strand: +
| Region | Start | End |
| gene | 182679 | 190048 |
| mRNA | 182679 | 190048 |
| exon | 182679 | 183599 |
| exon | 183817 | 185370 |
| exon | 185575 | 186369 |
| exon | 186857 | 187348 |
| exon | 188866 | 188956 |
| exon | 189210 | 190048 |
| CDS | 183357 | 183599 |
| CDS | 183817 | 185370 |
| CDS | 185575 | 186369 |
| CDS | 186857 | 187348 |
| CDS | 188866 | 188956 |
| CDS | 189210 | 189301 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF10433.8 | MMS1_N | 80 | 512 |
| PF03178.14 | CPSF_A | 720 | 1039 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Spliceosome | splicing factor 3B subunit 3 | ko03041 | K12830 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0005515 | protein binding |
| GO:0005634 | nucleus |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.