Annotation of co-expression genes

PH01002707G0030's details annotation

1.Annotation

ICBR annotation: MCM4 - Putative minichromosome maintenance MCM complex subunit 4, expressed

Blast result AT2G16440 : 0.00E+00
Blast annotation: Minichromosome maintenance (MCM2/3/5) family protein

2.Location

Scaffold: PH01002707
Strand: +

RegionStartEnd
gene2063126337
mRNA2063126337
exon2063121715
exon2198822116
exon2258322664
exon2276122893
exon2299523066
exon2317623298
exon2337923492
exon2357723789
exon2389523993
exon2408324243
exon2432724423
exon2457624737
exon2481524895
exon2500425082
exon2517425310
exon2541025460
exon2554526337
CDS2124721715
CDS2198822116
CDS2258322664
CDS2276122893
CDS2299523066
CDS2317623298
CDS2337923492
CDS2357723789
CDS2389523993
CDS2408324243
CDS2432724423
CDS2457624737
CDS2481524895
CDS2500425082
CDS2517425310
CDS2541025460
CDS2554525619

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF14551.5MCM_N47142
PF17207.2MCM_OB150279
PF00493.22MCM337662

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
DNA replicationDNA replication licensing factor MCM4 [EC:3.6.4.12]ko03030K02212

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0003677DNA binding
GO:0003678DNA helicase activity
GO:0005524ATP binding
GO:0006260DNA replication
GO:0006270DNA replication initiation
GO:0017111nucleoside-triphosphatase activity
GO:0042555MCM complex

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.