PH01002719G0020's details annotation
1.Annotation
ICBR annotation: OsPP2Ac-2 - Phosphatase 2A isoform 2 belonging to family 2, expressed
Blast result AT3G58500 : 2.00E-175
Blast annotation: protein phosphatase 2A-4
2.Location
Scaffold: PH01002719
Strand: +
| Region | Start | End |
| gene | 19900 | 23380 |
| mRNA | 19900 | 23380 |
| exon | 19900 | 20311 |
| exon | 21278 | 21361 |
| exon | 21464 | 21535 |
| exon | 21719 | 21790 |
| exon | 21929 | 21969 |
| exon | 22538 | 22604 |
| exon | 22715 | 22906 |
| exon | 22990 | 23079 |
| exon | 23159 | 23266 |
| exon | 23316 | 23380 |
| CDS | 20036 | 20311 |
| CDS | 21278 | 21361 |
| CDS | 21464 | 21535 |
| CDS | 21719 | 21790 |
| CDS | 21929 | 21969 |
| CDS | 22538 | 22604 |
| CDS | 22715 | 22906 |
| CDS | 22990 | 23079 |
| CDS | 23159 | 23266 |
| CDS | 23316 | 23324 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001723 | Proteasome proteolysis involved in cellular protein catabolic process, protein catabolic process, proteasome core complex, mRNA_surveillance_pathway |
| coexpression network | CFinderM001724 | 6-phosphofructokinase complex, fructose_6-phosphate_metabolic_process response to heat, diphosphate-fructose-6-phosphate 1-phosphotransferase activity, heat shock protein binding, 6-phosphofructokinase activity, phospholipid binding, |
| coexpression network | CFinderM001748 | methionine metabolic process, methylenetetrahydrofolate reductase (NADPH) activity, One_carbon_pool_by_folate Carbon_fixation_pathways_in_prokaryotes Protein_export |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00149.27 | Metallophos | 49 | 240 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| mRNA surveillance pathway | protein phosphatase 2 (formerly 2A), catalytic subunit [EC:3.1.3.-] | ko03015 | K04382 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016787 | hydrolase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.