PH01002728G0100's details annotation
1.Annotation
ICBR annotation: ER lumen protein retaining receptor, putative, expressed
Blast result AT3G25040 : 2.80E-50
Blast annotation: endoplasmic reticulum retention defective 2B
2.Location
Scaffold: PH01002728
Strand: -
| Region | Start | End |
| gene | 82078 | 84707 |
| mRNA | 82078 | 84707 |
| exon | 82078 | 82236 |
| exon | 82382 | 82647 |
| exon | 83627 | 83797 |
| exon | 84149 | 84707 |
| CDS | 82117 | 82236 |
| CDS | 82382 | 82647 |
| CDS | 83627 | 83797 |
| CDS | 84149 | 84239 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00810.17 | ER_lumen_recept | 88 | 215 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006621 | protein retention in ER lumen |
| GO:0016021 | integral to membrane |
| GO:0046923 | ER retention sequence binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.