PH01002743G0060's details annotation
1.Annotation
ICBR annotation: alpha-1,4-glucan-protein synthase, putative, expressed
Blast result AT3G08900 : 0.00E+00
Blast annotation: reversibly glycosylated polypeptide 3
2.Location
Scaffold: PH01002743
Strand: -
| Region | Start | End |
| gene | 37648 | 41156 |
| mRNA | 37648 | 41156 |
| exon | 37648 | 38211 |
| exon | 38427 | 38595 |
| exon | 38677 | 38927 |
| exon | 40622 | 41156 |
| CDS | 37864 | 38211 |
| CDS | 38427 | 38595 |
| CDS | 38677 | 38927 |
| CDS | 40622 | 40945 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000547 | bZIP Transcription_Regulator(from PlantTFDB) intramolecular transferase activity, |
| coexpression network | CFinderM001073 | |
| coexpression network | CFinderM001196 | nitronate monooxygenase activity, intramolecular transferase activity, |
| coexpression network | CFinderM001475 | cellulose biosynthetic process, intramolecular transferase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03214.12 | RGP | 12 | 346 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016866 | intramolecular transferase activity |
| GO:0030244 | cellulose biosynthetic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.