PH01002783G0050's details annotation
1.Annotation
ICBR annotation: phospholipase D p1, putative, expressed
Blast result AT3G16785 : 0.00E+00
Blast annotation: phospholipase D P1
2.Location
Scaffold: PH01002783
Strand: +
| Region | Start | End |
| gene | 20799 | 29329 |
| mRNA | 20799 | 29329 |
| exon | 20799 | 21330 |
| exon | 22402 | 22520 |
| exon | 22666 | 22807 |
| exon | 22939 | 23106 |
| exon | 23201 | 23374 |
| exon | 26105 | 26377 |
| exon | 26464 | 26580 |
| exon | 27854 | 27993 |
| exon | 28080 | 28229 |
| exon | 28342 | 28498 |
| exon | 28580 | 29113 |
| exon | 29275 | 29329 |
| CDS | 21004 | 21330 |
| CDS | 22402 | 22520 |
| CDS | 22666 | 22807 |
| CDS | 22939 | 23106 |
| CDS | 23201 | 23374 |
| CDS | 26105 | 26377 |
| CDS | 26464 | 26580 |
| CDS | 27854 | 27993 |
| CDS | 28080 | 28229 |
| CDS | 28342 | 28498 |
| CDS | 28580 | 29113 |
| CDS | 29275 | 29322 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000957 | DDT Transcription_Regulator(from iTAK) CMGC_CDK-PITSLRE (from iTAK) HB-HD-ZIP Transcription_Regulator(from iTAK) HD-ZIP Transcription_Regulator(from PlantTFDB) plant-type cell wall organization, Ether_lipid_metabolism Endocytosis Glycerophospholipid_metabolism extracellular region, |
| coexpression network | CFinderM001277 | plant-type cell wall organization, Ether_lipid_metabolism Glycerophospholipid_metabolism Endocytosis extracellular region, |
| coexpression network | CFinderM001317 | Ether_lipid_metabolism Endocytosis Glycerophospholipid_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00614.21 | PLDc | 485 | 512 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Glycerophospholipid metabolism | phospholipase D1/2 [EC:3.1.4.4] | ko00564 | K01115 |
| Ether lipid metabolism | phospholipase D1/2 [EC:3.1.4.4] | ko00565 | K01115 |
| Endocytosis | phospholipase D1/2 [EC:3.1.4.4] | ko04144 | K01115 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0005515 | protein binding |
| GO:0005543 | phospholipid binding |
| GO:0008152 | metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.