Annotation of co-expression genes

PH01002866G0210's details annotation

1.Annotation

ICBR annotation: RNA recognition motif containing protein, putative, expressed

Blast result AT5G60170 : 8.00E-107
Blast annotation: RNA binding (RRM/RBD/RNP motifs) family protein

2.Location

Scaffold: PH01002866
Strand: -

RegionStartEnd
gene137247144040
mRNA137247144040
exon137247138123
exon138203138679
exon139011140695
exon140767140843
exon140988141117
exon141432141523
exon141610141658
exon141731141814
exon142946143058
exon143156143315
exon143449143576
exon143662144040
CDS137582138123
CDS138203138679
CDS139011140695
CDS140767140843
CDS140988141117
CDS141432141523
CDS141610141658
CDS141731141814
CDS142946143058
CDS143156143315
CDS143449143576
CDS143662143760

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF14570.5zf-RING_41163

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
RNA degradationCCR4-NOT transcription complex subunit 4 [EC:6.3.2.1]ko03018K10643

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
GO:0005515protein binding
GO:0008270zinc ion binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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