PH01002942G0130's details annotation
1.Annotation
ICBR annotation: reticulon domain containing protein, putative, expressed
Blast result AT4G11220 : 6.00E-47
Blast annotation: VIRB2-interacting protein 2
2.Location
Scaffold: PH01002942
Strand: -
| Region | Start | End |
| gene | 118041 | 120156 |
| mRNA | 118041 | 120156 |
| exon | 118041 | 118690 |
| exon | 118902 | 119043 |
| exon | 119125 | 119305 |
| exon | 119662 | 120156 |
| CDS | 118487 | 118690 |
| CDS | 118902 | 119043 |
| CDS | 119125 | 119305 |
| CDS | 119662 | 119668 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02453.16 | Reticulon | 4 | 112 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005783 | endoplasmic reticulum |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.