PH01002996G0240's details annotation
1.Annotation
ICBR annotation: DUF647 domain containing protein, putative, expressed
Blast result AT5G49820 : 4.00E-154
Blast annotation: Protein of unknown function, DUF647
2.Location
Scaffold: PH01002996
Strand: -
| Region | Start | End |
| gene | 170885 | 175368 |
| mRNA | 170885 | 175368 |
| exon | 170885 | 170982 |
| exon | 171455 | 171646 |
| exon | 171736 | 171837 |
| exon | 171943 | 172007 |
| exon | 172083 | 172163 |
| exon | 172375 | 172447 |
| exon | 172541 | 172642 |
| exon | 172865 | 172984 |
| exon | 173095 | 173205 |
| exon | 173295 | 173366 |
| exon | 173681 | 173794 |
| exon | 173879 | 173977 |
| exon | 175196 | 175368 |
| CDS | 170890 | 170982 |
| CDS | 171455 | 171646 |
| CDS | 171736 | 171837 |
| CDS | 171943 | 172007 |
| CDS | 172083 | 172163 |
| CDS | 172375 | 172447 |
| CDS | 172541 | 172642 |
| CDS | 172865 | 172984 |
| CDS | 173095 | 173205 |
| CDS | 173295 | 173366 |
| CDS | 173681 | 173794 |
| CDS | 173879 | 173977 |
| CDS | 175196 | 175288 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04884.13 | DUF647 | 31 | 261 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.