PH01003050G0060's details annotation
1.Annotation
ICBR annotation: mitochondrial carrier protein, putative, expressed
Blast result AT5G17400 : 1.10E-71
Blast annotation: endoplasmic reticulum-adenine nucleotide transporter 1
2.Location
Scaffold: PH01003050
Strand: -
| Region | Start | End |
| gene | 62507 | 72979 |
| mRNA | 62507 | 72979 |
| exon | 62507 | 63529 |
| exon | 63719 | 63794 |
| exon | 65946 | 66019 |
| exon | 66316 | 66397 |
| exon | 67019 | 67137 |
| exon | 67305 | 67673 |
| exon | 68649 | 72979 |
| CDS | 63377 | 63529 |
| CDS | 63719 | 63794 |
| CDS | 65946 | 66019 |
| CDS | 66316 | 66397 |
| CDS | 67019 | 67137 |
| CDS | 67305 | 67673 |
| CDS | 68649 | 68951 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000085 | mitochondrial inner membrane, HD-ZIP Transcription_Regulator(from PlantTFDB) HB-HD-ZIP Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00153.26 | Mito_carr | 21 | 116 |
| PF00153.26 | Mito_carr | 124 | 218 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005215 | transporter activity |
| GO:0005743 | mitochondrial inner membrane |
| GO:0006810 | transport |
| GO:0055085 | transmembrane transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.