PH01003268G0030's details annotation
1.Annotation
ICBR annotation: STE_MEKK_ste11_MAP3K.16 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed
Blast result AT1G53570 : 6.00E-112
Blast annotation: mitogen-activated protein kinase kinase kinase 3
2.Location
Scaffold: PH01003268
Strand: +
| Region | Start | End |
| gene | 22660 | 29224 |
| mRNA | 22660 | 29224 |
| exon | 22660 | 23464 |
| exon | 24519 | 25079 |
| exon | 25416 | 25503 |
| exon | 25625 | 25687 |
| exon | 27423 | 27583 |
| exon | 27697 | 27772 |
| exon | 28301 | 28360 |
| exon | 28457 | 28564 |
| exon | 28616 | 29224 |
| CDS | 23436 | 23464 |
| CDS | 24519 | 25079 |
| CDS | 25416 | 25503 |
| CDS | 25625 | 25687 |
| CDS | 27423 | 27583 |
| CDS | 27697 | 27772 |
| CDS | 28301 | 28360 |
| CDS | 28457 | 28564 |
| CDS | 28616 | 28891 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001721 | STE_STE11 (from iTAK) outer membrane, Endocytosis |
| coexpression network | CFinderM001840 | transcription factor TFIIF complex, STE_STE11 (from iTAK) diphosphomevalonate decarboxylase activity, ATP binding, histone deacetylase activity, histone deacetylation, transcription initiation from RNA polymerase II promoter, Basal_transcription_factors Terpenoid_backbone_biosynthesis protein catabolic process, isoprenoid biosynthetic process, Endocytosis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00069.24 | Pkinase | 178 | 444 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.