PH01003420G0060's details annotation
1.Annotation
ICBR annotation: ATROPGEF7/ROPGEF7, putative, expressed
Blast result AT4G38430 : 6.00E-179
Blast annotation: rho guanyl-nucleotide exchange factor 1
2.Location
Scaffold: PH01003420
Strand: +
| Region | Start | End |
| gene | 47082 | 51284 |
| mRNA | 47082 | 51284 |
| exon | 47082 | 47929 |
| exon | 48038 | 48154 |
| exon | 48248 | 48783 |
| exon | 50282 | 50632 |
| exon | 50849 | 51284 |
| CDS | 47680 | 47929 |
| CDS | 48038 | 48154 |
| CDS | 48248 | 48783 |
| CDS | 50282 | 50632 |
| CDS | 50849 | 51274 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03759.12 | PRONE | 84 | 455 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005089 | Rho guanyl-nucleotide exchange factor activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.