PH01003445G0010's details annotation
1.Annotation
ICBR annotation: mTERF domain containing protein, expressed
Blast result AT2G21710 : 1.00E-167
Blast annotation: Mitochondrial transcription termination factor family protein
2.Location
Scaffold: PH01003445
Strand: -
| Region | Start | End |
| gene | 481 | 5871 |
| mRNA | 481 | 5871 |
| exon | 481 | 1661 |
| exon | 2024 | 2273 |
| exon | 2385 | 2659 |
| exon | 3503 | 3610 |
| exon | 3872 | 4087 |
| exon | 4636 | 5041 |
| exon | 5276 | 5871 |
| CDS | 1230 | 1661 |
| CDS | 2024 | 2273 |
| CDS | 2385 | 2659 |
| CDS | 3503 | 3610 |
| CDS | 3872 | 4087 |
| CDS | 4636 | 5041 |
| CDS | 5276 | 5406 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | mTERF |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02536.13 | mTERF | 66 | 147 |
| PF02536.13 | mTERF | 110 | 417 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.