Annotation of co-expression genes

PH01003450G0070's details annotation

1.Annotation

ICBR annotation: 3-ketoacyl-CoA synthase, putative, expressed

Blast result AT2G26640 : 0.00E+00
Blast annotation: 3-ketoacyl-CoA synthase 11

2.Location

Scaffold: PH01003450
Strand: -

RegionStartEnd
gene3191235762
mRNA3191235762
exon3191232724
exon3369835762
CDS3250932724
CDS3369835224

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000135RLK-Pelle_CrRLK1L-1 (from iTAK)
SWI/SNF-BAF60b Transcription_Regulator(from iTAK)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF08392.11FAE1_CUT1_RppA93382
PF08541.9ACP_syn_III_C399479

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Fatty acid elongation3-ketoacyl-CoA synthase [EC:2.3.1.199]ko00062K15397

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0006633fatty acid biosynthetic process
GO:0008152metabolic process
GO:0008610lipid biosynthetic process
GO:0016020membrane
GO:0016747transferase activity, transferring acyl groups other than amino-acyl groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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