PH01003530G0070's details annotation
1.Annotation
ICBR annotation: protein phosphatase 2C, putative, expressed
Blast result AT5G53140 : 6.20E-84
Blast annotation: Protein phosphatase 2C family protein
2.Location
Scaffold: PH01003530
Strand: -
| Region | Start | End |
| gene | 44236 | 48439 |
| mRNA | 44236 | 48439 |
| exon | 44236 | 44744 |
| exon | 45045 | 45119 |
| exon | 45351 | 45442 |
| exon | 46579 | 46665 |
| exon | 47260 | 47418 |
| exon | 47699 | 48439 |
| CDS | 44607 | 44744 |
| CDS | 45045 | 45119 |
| CDS | 45351 | 45442 |
| CDS | 46579 | 46665 |
| CDS | 47260 | 47418 |
| CDS | 47699 | 47771 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001312 | metalloendopeptidase activity, Riboflavin_metabolism 6-phosphofructokinase complex, GTP cyclohydrolase II activity, catalytic activity, 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, proteolysis, riboflavin biosynthetic process, metallopeptidase activity, 6-phosphofructokinase activity, glycolysis, |
| coexpression network | CFinderM001422 | Glycine,_serine_and_threonine_metabolism small-subunit processome, mitochondrial proton-transporting ATP synthase complex, coupling factor F(o), clathrin adaptor complex, |
| coexpression network | CFinderM001736 | Oxidative_phosphorylation proton-transporting V-type ATPase, V1 domain, mitochondrial proton-transporting ATP synthase complex, coupling factor F(o), proton-transporting two-sector ATPase complex, catalytic domain, clathrin adaptor complex, Phagosome ATP metabolic process, proton transport, ATP synthesis coupled proton transport, ATP hydrolysis coupled proton transport, hydrogen ion transmembrane transporter activity, transferase activity, transferring alkyl or aryl (other than methyl) groups, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00481.20 | PP2C | 27 | 194 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.