PH01003533G0090's details annotation
1.Annotation
ICBR annotation: OsFBW2 - F-box domain and WD40 repeat containing protein, expressed
Blast result AT3G52030 : 4.00E-18
Blast annotation: F-box family protein with WD40/YVTN repeat doamin
2.Location
Scaffold: PH01003533
Strand: +
| Region | Start | End |
| gene | 84908 | 90919 |
| mRNA | 84908 | 90919 |
| exon | 84908 | 86732 |
| exon | 86929 | 87071 |
| exon | 87856 | 88041 |
| exon | 88276 | 88330 |
| exon | 88496 | 88594 |
| exon | 90197 | 90331 |
| exon | 90511 | 90919 |
| CDS | 86706 | 86732 |
| CDS | 86929 | 87071 |
| CDS | 87856 | 88041 |
| CDS | 88276 | 88330 |
| CDS | 88496 | 88594 |
| CDS | 90197 | 90331 |
| CDS | 90511 | 90684 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01423.21 | LSM | 175 | 214 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.