PH01003828G0130's details annotation
1.Annotation
ICBR annotation: 40S ribosomal protein S5, putative, expressed
Blast result AT2G37270 : 5.70E-97
Blast annotation: ribosomal protein 5B
2.Location
Scaffold: PH01003828
Strand: -
| Region | Start | End |
| gene | 77551 | 80857 |
| mRNA | 77551 | 80857 |
| exon | 77551 | 77651 |
| exon | 78119 | 78322 |
| exon | 78920 | 79191 |
| exon | 80693 | 80857 |
| CDS | 77597 | 77651 |
| CDS | 78119 | 78322 |
| CDS | 78920 | 79191 |
| CDS | 80693 | 80761 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000940 | nucleic acid binding, Ribosome_biogenesis_in_eukaryotes |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00177.20 | Ribosomal_S7 | 54 | 199 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ribosome | small subunit ribosomal protein S5e | ko03011 | K02989 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003723 | RNA binding |
| GO:0003735 | structural constituent of ribosome |
| GO:0005622 | intracellular |
| GO:0005840 | ribosome |
| GO:0006412 | translation |
| GO:0015935 | small ribosomal subunit |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.