PH01003910G0060's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT4G22740 : 8.60E-43
Blast annotation: glycine-rich protein
2.Location
Scaffold: PH01003910
Strand: +
| Region | Start | End |
| gene | 84266 | 89160 |
| mRNA | 84266 | 89160 |
| exon | 84266 | 86202 |
| exon | 86750 | 86913 |
| exon | 87036 | 87116 |
| exon | 87202 | 87277 |
| exon | 87356 | 87445 |
| exon | 87555 | 87586 |
| exon | 88804 | 89160 |
| CDS | 85785 | 86202 |
| CDS | 86750 | 86913 |
| CDS | 87036 | 87116 |
| CDS | 87202 | 87277 |
| CDS | 87356 | 87445 |
| CDS | 87555 | 87586 |
| CDS | 88804 | 88965 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001234 | Spliceosome |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF10248.8 | Mlf1IP | 45 | 258 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.