PH01003917G0090's details annotation
1.Annotation
ICBR annotation: pre-mRNA-splicing factor syf2, putative, expressed
Blast result AT2G16860 : 2.50E-98
Blast annotation: GCIP-interacting family protein
2.Location
Scaffold: PH01003917
Strand: +
| Region | Start | End |
| gene | 54030 | 59833 |
| mRNA | 54030 | 59833 |
| exon | 54030 | 56016 |
| exon | 56150 | 56325 |
| exon | 56426 | 56666 |
| exon | 57475 | 57611 |
| exon | 57710 | 59833 |
| CDS | 55770 | 56016 |
| CDS | 56150 | 56325 |
| CDS | 56426 | 56666 |
| CDS | 57475 | 57611 |
| CDS | 57710 | 57937 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08231.11 | SYF2 | 188 | 335 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Spliceosome | pre-mRNA-splicing factor SYF2 | ko03041 | K12868 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.