PH01003973G0140's details annotation
1.Annotation
ICBR annotation: transcription factor jumonji, putative, expressed
Blast result AT1G08620 : 0.00E+00
Blast annotation: Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein
2.Location
Scaffold: PH01003973
Strand: +
| Region | Start | End |
| gene | 93245 | 101113 |
| mRNA | 93245 | 101113 |
| exon | 93245 | 94568 |
| exon | 94670 | 94750 |
| exon | 94836 | 94913 |
| exon | 95020 | 95490 |
| exon | 95793 | 96017 |
| exon | 96133 | 96294 |
| exon | 97167 | 97535 |
| exon | 97614 | 98603 |
| exon | 98667 | 99030 |
| exon | 99308 | 99411 |
| exon | 99489 | 99686 |
| exon | 99988 | 101113 |
| CDS | 94227 | 94568 |
| CDS | 94670 | 94750 |
| CDS | 94836 | 94913 |
| CDS | 95020 | 95490 |
| CDS | 95793 | 96017 |
| CDS | 96133 | 96294 |
| CDS | 97167 | 97535 |
| CDS | 97614 | 98603 |
| CDS | 98667 | 99030 |
| CDS | 99308 | 99411 |
| CDS | 99489 | 99686 |
| CDS | 99988 | 100251 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000341 | exosome_(RNase_complex) COP9_signalosome |
| coexpression network | CFinderM001689 | Ribosome translation, Jumonji Transcription_Regulator(from iTAK) structural constituent of ribosome, Ribosome small ribosomal subunit, intracellular, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | Jumonji |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02375.16 | JmjN | 160 | 193 |
| PF02373.21 | JmjC | 387 | 503 |
| PF02928.15 | zf-C5HC2 | 609 | 659 |
| PF05964.13 | FYRN | 1007 | 1051 |
| PF05965.13 | FYRC | 1058 | 1146 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0005634 | nucleus |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.