PH01003981G0020's details annotation
1.Annotation
ICBR annotation: vacuolar ATP synthase subunit d, putative, expressed
Blast result AT3G28715 : 0.00E+00
Blast annotation: ATPase, V0/A0 complex, subunit C/D
2.Location
Scaffold: PH01003981
Strand: +
| Region | Start | End |
| gene | 26259 | 32698 |
| mRNA | 26259 | 32698 |
| exon | 26259 | 28384 |
| exon | 29469 | 29589 |
| exon | 29707 | 29814 |
| exon | 29923 | 30025 |
| exon | 30130 | 30210 |
| exon | 30318 | 30403 |
| exon | 30530 | 30589 |
| exon | 30697 | 30745 |
| exon | 31809 | 31943 |
| exon | 32401 | 32698 |
| CDS | 27847 | 28384 |
| CDS | 29469 | 29589 |
| CDS | 29707 | 29814 |
| CDS | 29923 | 30025 |
| CDS | 30130 | 30210 |
| CDS | 30318 | 30403 |
| CDS | 30530 | 30589 |
| CDS | 30697 | 30745 |
| CDS | 31809 | 31943 |
| CDS | 32401 | 32532 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01992.15 | vATP-synt_AC39 | 135 | 463 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Oxidative phosphorylation | V-type H+-transporting ATPase subunit AC39 [EC:3.6.3.-] | ko00190 | K02146 |
| Phagosome | V-type H+-transporting ATPase subunit AC39 [EC:3.6.3.-] | ko04145 | K02146 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0015078 | hydrogen ion transmembrane transporter activity |
| GO:0015991 | ATP hydrolysis coupled proton transport |
| GO:0033179 | proton-transporting V-type ATPase, V0 domain |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.