Annotation of co-expression genes

PH01004069G0030's details annotation

1.Annotation

ICBR annotation: receptor-like protein kinase 2, putative, expressed

Blast result AT1G07650 : 2.00E-171
Blast annotation: Leucine-rich repeat transmembrane protein kinase

2.Location

Scaffold: PH01004069
Strand: -

RegionStartEnd
gene934217708
mRNA934217708
exon93429587
exon96259743
exon1024710414
exon1060810803
exon1089111270
exon1163811696
exon1193912004
exon1251512580
exon1271912790
exon1302213093
exon1317113245
exon1336413435
exon1352513596
exon1386513936
exon1402414095
exon1636516433
exon1652916600
exon1676516918
exon1747717708
CDS94509587
CDS96259743
CDS1024710414
CDS1060810803
CDS1089111270
CDS1163811696
CDS1193912004
CDS1251512580
CDS1271912790
CDS1302213093
CDS1317113245
CDS1336413435
CDS1352513596
CDS1386513936
CDS1402414095
CDS1636516433
CDS1652916600
CDS1676516918
CDS1747717597

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000492SCY1_SCYL1 (from iTAK)
RLK-Pelle_RLCK-IXb (from iTAK)
SWI/SNF-BAF60b Transcription_Regulator(from iTAK)
protein binding,
protein phosphatase type 2A complex,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF13855.5LRR_8258315
PF11721.7Malectin375559

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.