PH01004142G0010's details annotation
1.Annotation
ICBR annotation: calreticulin precursor protein, putative, expressed
Blast result AT1G56340 : 4.40E-30
Blast annotation: calreticulin 1a
2.Location
Scaffold: PH01004142
Strand: +
| Region | Start | End |
| gene | 722 | 5776 |
| mRNA | 722 | 5776 |
| exon | 722 | 3396 |
| exon | 3542 | 3599 |
| exon | 3690 | 3757 |
| exon | 3854 | 3949 |
| exon | 4033 | 4077 |
| exon | 4579 | 4617 |
| exon | 4694 | 4783 |
| exon | 5175 | 5213 |
| exon | 5279 | 5776 |
| CDS | 3394 | 3396 |
| CDS | 3542 | 3599 |
| CDS | 3690 | 3757 |
| CDS | 3854 | 3949 |
| CDS | 4033 | 4077 |
| CDS | 4579 | 4617 |
| CDS | 4694 | 4783 |
| CDS | 5175 | 5213 |
| CDS | 5279 | 5335 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001368 | Protein_processing_in_endoplasmic_reticulum cell redox homeostasis, endoplasmic reticulum, |
| coexpression network | CFinderM001486 | endoplasmic reticulum, protein folding, Protein_processing_in_endoplasmic_reticulum unfolded protein binding, HSF Transcription_Regulator(from PlantTFDB) calcium ion binding, Phagosome |
| coexpression network | CFinderM001604 | GT31 GlycosylTransferases Nucleotide_excision_repair guanyl nucleotide binding, G-protein_beta/gamma-subunit_complex_binding DNA metabolic process, G-protein coupled receptor signaling pathway, nuclease activity, endoplasmic reticulum, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00262.17 | Calreticulin | 2 | 55 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005509 | calcium ion binding |
| GO:0005515 | protein binding |
| GO:0005783 | endoplasmic reticulum |
| GO:0006457 | protein folding |
| GO:0051082 | unfolded protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.