PH01004198G0010's details annotation
1.Annotation
ICBR annotation: KH domain containing protein, putative, expressed
Blast result AT1G09660 : 8.50E-88
Blast annotation: RNA-binding KH domain-containing protein
2.Location
Scaffold: PH01004198
Strand: -
| Region | Start | End |
| gene | 4509 | 9364 |
| mRNA | 4509 | 9364 |
| exon | 4509 | 4815 |
| exon | 5095 | 5243 |
| exon | 5324 | 5467 |
| exon | 6579 | 6695 |
| exon | 6804 | 6920 |
| exon | 7632 | 7777 |
| exon | 8486 | 8571 |
| exon | 9122 | 9364 |
| CDS | 4683 | 4815 |
| CDS | 5095 | 5243 |
| CDS | 5324 | 5467 |
| CDS | 6579 | 6695 |
| CDS | 6804 | 6920 |
| CDS | 7632 | 7777 |
| CDS | 8486 | 8571 |
| CDS | 9122 | 9231 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF16544.4 | STAR_dimer | 36 | 78 |
| PF00013.28 | KH_1 | 142 | 185 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003723 | RNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.