PH01004452G0090's details annotation
1.Annotation
ICBR annotation: dehydrogenase, putative, expressed
Blast result AT5G14590 : 1.80E-35
Blast annotation: Isocitrate/isopropylmalate dehydrogenase family protein
2.Location
Scaffold: PH01004452
Strand: +
| Region | Start | End |
| gene | 73894 | 76654 |
| mRNA | 73894 | 76654 |
| exon | 73894 | 74589 |
| exon | 74669 | 74712 |
| exon | 74799 | 74908 |
| exon | 76051 | 76654 |
| CDS | 74379 | 74589 |
| CDS | 74669 | 74712 |
| CDS | 74799 | 74908 |
| CDS | 76051 | 76102 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00180.19 | Iso_dh | 61 | 135 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004450 | isocitrate dehydrogenase (NADP+) activity |
| GO:0006102 | isocitrate metabolic process |
| GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.