PH01004489G0050's details annotation
1.Annotation
ICBR annotation: PHD-finger family protein, expressed
Blast result AT5G16680 : 5.60E-48
Blast annotation: RING/FYVE/PHD zinc finger superfamily protein
2.Location
Scaffold: PH01004489
Strand: -
| Region | Start | End |
| gene | 44845 | 50901 |
| mRNA | 44845 | 50901 |
| exon | 44845 | 46070 |
| exon | 46164 | 46287 |
| exon | 46598 | 47013 |
| exon | 47104 | 47228 |
| exon | 47339 | 47569 |
| exon | 47832 | 48582 |
| exon | 48647 | 49129 |
| exon | 49268 | 49752 |
| exon | 50800 | 50901 |
| CDS | 45376 | 46070 |
| CDS | 46164 | 46287 |
| CDS | 46598 | 47013 |
| CDS | 47104 | 47228 |
| CDS | 47339 | 47569 |
| CDS | 47832 | 48582 |
| CDS | 48647 | 49129 |
| CDS | 49268 | 49752 |
| CDS | 50800 | 50849 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.