PH01004552G0110's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT2G40290 : 4.00E-138
Blast annotation: Eukaryotic translation initiation factor 2 subunit 1
2.Location
Scaffold: PH01004552
Strand: -
| Region | Start | End |
| gene | 70860 | 76733 |
| mRNA | 70860 | 76733 |
| exon | 70860 | 71767 |
| exon | 73873 | 73971 |
| exon | 74908 | 75012 |
| exon | 75105 | 75251 |
| exon | 75928 | 76733 |
| CDS | 71615 | 71767 |
| CDS | 73873 | 73971 |
| CDS | 74908 | 75012 |
| CDS | 75105 | 75251 |
| CDS | 75928 | 76443 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00575.22 | S1 | 15 | 88 |
| PF07541.11 | EIF_2_alpha | 126 | 256 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| RNA transport | translation initiation factor 2 subunit 1 | ko03013 | K03237 |
| Protein processing in endoplasmic reticulum | translation initiation factor 2 subunit 1 | ko04141 | K03237 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003723 | RNA binding |
| GO:0003743 | translation initiation factor activity |
| GO:0005850 | eukaryotic translation initiation factor 2 complex |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.