PH01004553G0030's details annotation
1.Annotation
ICBR annotation: ribosomal protein S17, putative, expressed
Blast result AT1G49400 : 1.10E-32
Blast annotation: Nucleic acid-binding, OB-fold-like protein
2.Location
Scaffold: PH01004553
Strand: -
| Region | Start | End |
| gene | 27439 | 32157 |
| mRNA | 27439 | 32157 |
| exon | 27439 | 28226 |
| exon | 29189 | 29246 |
| exon | 29743 | 29818 |
| exon | 29897 | 32157 |
| CDS | 28062 | 28226 |
| CDS | 29189 | 29246 |
| CDS | 29743 | 29818 |
| CDS | 29897 | 30062 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00366.19 | Ribosomal_S17 | 6 | 58 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003735 | structural constituent of ribosome |
| GO:0005622 | intracellular |
| GO:0005840 | ribosome |
| GO:0006412 | translation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.