Annotation of co-expression genes

PH01004584G0090's details annotation

1.Annotation

ICBR annotation: alpha-galactosidase precursor, putative, expressed

Blast result AT5G08370 : 8.00E-124
Blast annotation: alpha-galactosidase 2

2.Location

Scaffold: PH01004584
Strand: +

RegionStartEnd
gene6562469210
mRNA6562469210
exon6562465805
exon6630966367
exon6653366589
exon6669566729
exon6690667009
exon6737767442
exon6767967762
exon6793868002
exon6815068232
exon6835968449
exon6854768596
exon6868568825
exon6892969210
CDS6566965805
CDS6630966367
CDS6653366589
CDS6669566729
CDS6690667009
CDS6737767442
CDS6767967762
CDS6793868002
CDS6815068232
CDS6835968449
CDS6854768596
CDS6868568825
CDS6892969012

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF16499.4Melibiase_242133
PF16499.4Melibiase_2166261
PF17450.1Melibiase_2_C264299

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Glycosphingolipid biosynthesis - globo seriesalpha-N-acetylgalactosaminidase [EC:3.2.1.49]K01204

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005975carbohydrate metabolic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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