PH01004616G0090's details annotation
1.Annotation
ICBR annotation: ZOS2-07 - C2H2 zinc finger protein, expressed
Blast result AT1G04850 : 4.00E-143
Blast annotation: ubiquitin-associated (UBA)/TS-N domain-containing protein
2.Location
Scaffold: PH01004616
Strand: +
| Region | Start | End |
| gene | 36333 | 38907 |
| mRNA | 36333 | 38907 |
| exon | 36333 | 37155 |
| exon | 37274 | 37421 |
| exon | 37519 | 37614 |
| exon | 38580 | 38656 |
| exon | 38707 | 38907 |
| CDS | 36988 | 37155 |
| CDS | 37274 | 37421 |
| CDS | 37519 | 37614 |
| CDS | 38580 | 38656 |
| CDS | 38707 | 38760 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | C2H2 |
| Transcription_Regulator(from PlantTFDB) | C2H2 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00627.30 | UBA | 114 | 149 |
| PF09409.9 | PUB | 320 | 391 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.