PH01004627G0080's details annotation
1.Annotation
ICBR annotation: cyclin-A1, putative, expressed
Blast result AT1G44110 : 1.50E-95
Blast annotation: Cyclin A1;1
2.Location
Scaffold: PH01004627
Strand: -
| Region | Start | End |
| gene | 59250 | 64392 |
| mRNA | 59250 | 64392 |
| exon | 59250 | 59867 |
| exon | 60145 | 60279 |
| exon | 60379 | 60528 |
| exon | 60885 | 60960 |
| exon | 61062 | 61195 |
| exon | 61296 | 61388 |
| exon | 62079 | 62165 |
| exon | 62365 | 62498 |
| exon | 62570 | 62969 |
| exon | 63846 | 64392 |
| CDS | 59850 | 59867 |
| CDS | 60145 | 60279 |
| CDS | 60379 | 60528 |
| CDS | 60885 | 60960 |
| CDS | 61062 | 61195 |
| CDS | 61296 | 61388 |
| CDS | 62079 | 62165 |
| CDS | 62365 | 62498 |
| CDS | 62570 | 62969 |
| CDS | 63846 | 63980 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00134.22 | Cyclin_N | 253 | 352 |
| PF02984.18 | Cyclin_C | 356 | 448 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000079 | regulation of cyclin-dependent protein serine/threonine kinase activity |
| GO:0005634 | nucleus |
| GO:0019901 | protein kinase binding |
| GO:0051726 | regulation of cell cycle |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.