Annotation of co-expression genes

PH01004769G0020's details annotation

1.Annotation

ICBR annotation: transketolase, putative, expressed

Blast result AT5G11380 : 0.00E+00
Blast annotation: 1-deoxy-D-xylulose 5-phosphate synthase 3

2.Location

Scaffold: PH01004769
Strand: -

RegionStartEnd
gene1272218620
mRNA1272218620
exon1272213903
exon1414414428
exon1467814956
exon1530515609
exon1608516364
exon1687016952
exon1784717913
exon1827218620
CDS1375413903
CDS1414414428
CDS1467814956
CDS1530515609
CDS1608516364
CDS1687016952
CDS1784717913
CDS1827218469

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF13292.5DXP_synthase_N292
PF13292.5DXP_synthase_N115190
PF02779.23Transket_pyr229389
PF02780.19Transketolase_C406529

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Terpenoid backbone biosynthesis1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]ko00900K01662

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0008152metabolic process
GO:00086611-deoxy-D-xylulose-5-phosphate synthase activity
GO:0016114terpenoid biosynthetic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.