PH01004857G0140's details annotation
1.Annotation
ICBR annotation: TBC domain containing protein, expressed
Blast result AT2G39280 : 1.80E-36
Blast annotation: Ypt/Rab-GAP domain of gyp1p superfamily protein
2.Location
Scaffold: PH01004857
Strand: -
| Region | Start | End |
| gene | 73045 | 78614 |
| mRNA | 73045 | 78614 |
| exon | 73045 | 73263 |
| exon | 74399 | 74427 |
| exon | 75235 | 75348 |
| exon | 75468 | 75647 |
| exon | 76138 | 76302 |
| exon | 76390 | 76554 |
| exon | 76806 | 77324 |
| exon | 77414 | 77483 |
| exon | 78066 | 78614 |
| CDS | 73173 | 73263 |
| CDS | 74399 | 74427 |
| CDS | 75235 | 75348 |
| CDS | 75468 | 75647 |
| CDS | 76138 | 76302 |
| CDS | 76390 | 76554 |
| CDS | 76806 | 77324 |
| CDS | 77414 | 77483 |
| CDS | 78066 | 78109 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001768 | regulation of Rab GTPase activity, Rab GTPase activator activity, intracellular, Nucleotide_excision_repair G-protein coupled receptor signaling pathway, DNA metabolic process, guanyl nucleotide binding, G-protein_beta/gamma-subunit_complex_binding nuclease activity, |
| coexpression network | CFinderM001774 | regulation of Rab GTPase activity, Rab GTPase activator activity, intracellular, DNA metabolic process, isoprenoid biosynthetic process, nuclease activity, Nucleotide_excision_repair Terpenoid_backbone_biosynthesis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00566.17 | RabGAP-TBC | 371 | 420 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005097 | Rab GTPase activator activity |
| GO:0005622 | intracellular |
| GO:0032313 | regulation of Rab GTPase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.