PH01004905G0040's details annotation
1.Annotation
ICBR annotation: plant neutral invertase domain containing protein, expressed
Blast result AT1G22650 : 0.00E+00
Blast annotation: Plant neutral invertase family protein
2.Location
Scaffold: PH01004905
Strand: +
| Region | Start | End |
| gene | 19644 | 24069 |
| mRNA | 19644 | 24069 |
| exon | 19644 | 20112 |
| exon | 20510 | 20941 |
| exon | 21332 | 21890 |
| exon | 22018 | 22150 |
| exon | 23020 | 24069 |
| CDS | 19756 | 20112 |
| CDS | 20510 | 20941 |
| CDS | 21332 | 21890 |
| CDS | 22018 | 22150 |
| CDS | 23020 | 23533 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Glycoside_Hydrolases | GH100 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12899.6 | Glyco_hydro_100 | 85 | 494 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0033926 | glycopeptide alpha-N-acetylgalactosaminidase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.