PH01005129G0070's details annotation
1.Annotation
ICBR annotation: cellulase, putative, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01005129
Strand: +
| Region | Start | End |
| gene | 32112 | 37395 |
| mRNA | 32112 | 37395 |
| exon | 32112 | 32627 |
| exon | 33396 | 33502 |
| exon | 33594 | 33713 |
| exon | 34353 | 34532 |
| exon | 34628 | 34786 |
| exon | 34904 | 35073 |
| exon | 35133 | 35327 |
| exon | 35833 | 36185 |
| exon | 36435 | 36600 |
| exon | 37166 | 37395 |
| CDS | 32396 | 32627 |
| CDS | 33396 | 33502 |
| CDS | 33594 | 33713 |
| CDS | 34353 | 34532 |
| CDS | 34628 | 34786 |
| CDS | 34904 | 35073 |
| CDS | 35133 | 35327 |
| CDS | 35833 | 36185 |
| CDS | 36435 | 36600 |
| CDS | 37166 | 37253 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00150.17 | Cellulase | 277 | 549 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0030674 | protein binding, bridging |
| GO:0051015 | actin filament binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.