PH01005728G0040's details annotation
1.Annotation
ICBR annotation: Regulator of chromosome condensation domain containing protein, expressed
Blast result AT5G16040 : 1.00E-166
Blast annotation: Regulator of chromosome condensation (RCC1) family protein
2.Location
Scaffold: PH01005728
Strand: -
| Region | Start | End |
| gene | 17914 | 32258 |
| mRNA | 17914 | 32258 |
| exon | 17914 | 18492 |
| exon | 18798 | 18809 |
| exon | 19382 | 19438 |
| exon | 19576 | 19686 |
| exon | 20609 | 20662 |
| exon | 21133 | 21334 |
| exon | 21427 | 21512 |
| exon | 21836 | 21954 |
| exon | 22041 | 22101 |
| exon | 22186 | 22296 |
| exon | 23009 | 23065 |
| exon | 23115 | 23129 |
| exon | 23194 | 23304 |
| exon | 24211 | 24264 |
| exon | 24746 | 24947 |
| exon | 25040 | 25125 |
| exon | 25399 | 25517 |
| exon | 25595 | 25655 |
| exon | 25738 | 25848 |
| exon | 25960 | 26104 |
| exon | 28598 | 28682 |
| exon | 29223 | 29302 |
| exon | 30404 | 32258 |
| CDS | 18301 | 18492 |
| CDS | 18798 | 18809 |
| CDS | 19382 | 19438 |
| CDS | 19576 | 19686 |
| CDS | 20609 | 20662 |
| CDS | 21133 | 21334 |
| CDS | 21427 | 21512 |
| CDS | 21836 | 21954 |
| CDS | 22041 | 22101 |
| CDS | 22186 | 22296 |
| CDS | 23009 | 23065 |
| CDS | 23115 | 23129 |
| CDS | 23194 | 23304 |
| CDS | 24211 | 24264 |
| CDS | 24746 | 24947 |
| CDS | 25040 | 25125 |
| CDS | 25399 | 25517 |
| CDS | 25595 | 25655 |
| CDS | 25738 | 25848 |
| CDS | 25960 | 26104 |
| CDS | 28598 | 28682 |
| CDS | 29223 | 29302 |
| CDS | 30404 | 30486 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00415.17 | RCC1 | 129 | 179 |
| PF00415.17 | RCC1 | 182 | 239 |
| PF00415.17 | RCC1 | 289 | 337 |
| PF00415.17 | RCC1 | 340 | 395 |
| PF00415.17 | RCC1 | 405 | 451 |
| PF00415.17 | RCC1 | 454 | 511 |
| PF00415.17 | RCC1 | 560 | 609 |
| PF00415.17 | RCC1 | 612 | 662 |
| PF00415.17 | RCC1 | 675 | 729 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.