Gene details

Annotation of co-expression genes

PH01005976G0040's details annotation

1.Annotation

ICBR annotation: squalene synthetase, putative, expressed

Blast result AT4G34640 : 5.00E-122
Blast annotation: squalene synthase 1

2.Location

Scaffold: PH01005976
Strand: +

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	null
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM001049	microtubule associated complex, microtubule-based movement, microtubule motor activity, PcG_protein_complex F-actin capping protein complex, Sesquiterpenoid_and_triterpenoid_biosynthesis spindle pole, WASH_complex microtubule organizing center, DNA polymerase III complex, RLK-Pelle_RLCK-V (from iTAK) CK1_CK1 (from iTAK) Pantothenate_and_CoA_biosynthesis macromolecule biosynthetic process,

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

Pfam Accession	Pfam Annotation	Alignment Start	Alignment Start
PF00494.18	SQS_PSY	40	279

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
Sesquiterpenoid and triterpenoid biosynthesis	farnesyl-diphosphate farnesyltransferase [EC:2.5.1.21]	ko00909	K00801

10.Gene Ontology

GO Accession	GO Annotation
GO:0004310	farnesyl-diphosphate farnesyltransferase activity
GO:0008610	lipid biosynthetic process
GO:0009058	biosynthetic process
GO:0016021	integral to membrane
GO:0016740	transferase activity
GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

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