PH01006052G0030's details annotation
1.Annotation
ICBR annotation: S1 RNA binding domain containing protein, expressed
Blast result AT3G11964 : 1.90E-39
Blast annotation: RNA binding;RNA binding
2.Location
Scaffold: PH01006052
Strand: -
| Region | Start | End |
| gene | 17663 | 22600 |
| mRNA | 17663 | 22600 |
| exon | 17663 | 18381 |
| exon | 18463 | 18549 |
| exon | 18805 | 18981 |
| exon | 19102 | 19394 |
| exon | 19464 | 19503 |
| exon | 19620 | 19912 |
| exon | 20603 | 22600 |
| CDS | 18294 | 18381 |
| CDS | 18463 | 18549 |
| CDS | 18805 | 18981 |
| CDS | 19102 | 19394 |
| CDS | 19464 | 19503 |
| CDS | 19620 | 19912 |
| CDS | 20603 | 20623 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.