PH01006143G0050's details annotation
1.Annotation
ICBR annotation: PP2A regulatory subunit TAP46, putative, expressed
Blast result AT5G53000 : 6.00E-130
Blast annotation: 2A phosphatase associated protein of 46 kD
2.Location
Scaffold: PH01006143
Strand: +
| Region | Start | End |
| gene | 14769 | 20032 |
| mRNA | 14769 | 20032 |
| exon | 14769 | 15786 |
| exon | 16110 | 16196 |
| exon | 16341 | 16445 |
| exon | 16642 | 16803 |
| exon | 17417 | 17452 |
| exon | 17584 | 17655 |
| exon | 18254 | 18531 |
| exon | 19355 | 20032 |
| CDS | 15487 | 15786 |
| CDS | 16110 | 16196 |
| CDS | 16341 | 16445 |
| CDS | 16642 | 16803 |
| CDS | 17417 | 17452 |
| CDS | 17584 | 17655 |
| CDS | 18254 | 18531 |
| CDS | 19355 | 19589 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04177.11 | TAP42 | 29 | 403 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0009966 | regulation of signal transduction |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.